jplace - Json format

jplace is a json format created in 2012.

#2733on PLDB

12Years Old

jplace first developed in Fred Hutchinson Cancer Research Center and University of Washington and Heidelberg Institute for Theoretical Studies
Read more about jplace on the web: 1.

Example from the web:

{
“tree”: “((A:0.2{0},B:0.09{1}):0.7{2},C:0.5{3}){4};”,
“placements”:
[
   {“p”:
       [[1, −2578.16, 0.777385, 0.004132, 0.0006],
       [0, −2580.15, 0.107065, 0.000009, 0.0153]
       ],
   “n”: [“fragment1”, “fragment2”]
   },
   {“p”: [[2, −2576.46, 1.0, 0.003555, 0.000006]],
       “nm”: [[“fragment3”, 1.5], [“fragment4”, 2]]}
],
“metadata”:
{“invocation”:
   “pplacer -c tiny.refpkg frags.fasta”
},
“version”: 3,“fields”:
[“edge_num”, “likelihood”, “like_weight_ratio”,
           “distal_length”, “pendant_length”]
}