Top 1K Features Creators Events Podcasts Books Extensions Interviews Blog Explorer CSV

FASTQ

< >

FASTQ is a text data format created in 2000.

#1494on PLDB 24Years Old
Wikipedia

FASTQ format is a text-based format for storing both a biological sequence (usually nucleotide sequence) and its corresponding quality scores. Both the sequence letter and quality score are each encoded with a single ASCII character for brevity. It was originally developed at the Wellcome Trust Sanger Institute to bundle a FASTA formatted sequence and its quality data, but has recently become the de facto standard for storing the output of high-throughput sequencing instruments such as the Illumina Genome Analyzer.. Read more on Wikipedia...


Example from the web:
@SEQ_ID GATTTGGGGTTCAAAGCAGTATCGATCAAATAGTAAATCCATTTGTTCAACTCACAGTTT + !''*((((***+))%%%++)(%%%%).1***-+*''))**55CCF>>>>>>CCCCCCC65
Example from Wikipedia:
sed -e 'n;n;n;y/!"#$%&'\''()*+,-.\/0123456789:;<=>?@ABCDEFGHIJKL/โ–โ–โ–โ–โ–โ–โ–โ–โ–‚โ–‚โ–‚โ–‚โ–‚โ–ƒโ–ƒโ–ƒโ–ƒโ–ƒโ–„โ–„โ–„โ–„โ–„โ–…โ–…โ–…โ–…โ–…โ–†โ–†โ–†โ–†โ–†โ–‡โ–‡โ–‡โ–‡โ–‡โ–ˆโ–ˆโ–ˆโ–ˆโ–ˆโ–ˆ/' myfile.fastq # add -i to save the result to the same input file

- Build the next great programming language ยท Add ยท Issues ยท About ยท Search ยท Keywords ยท Livestreams ยท Labs ยท Resources ยท Acknowledgements

Built with Scroll v164.7.0